Welcome!
NCGR October 2022 Virtual Bioinformatics Workshop on
Differential Gene Expression (DE)
Syllabus / Documents
(all times are Mountain Daylight Time. File links are updated frequently, please refresh your browser for latest files)
(all times are Mountain Daylight Time. File links are updated frequently, please refresh your browser for latest files)
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Monday 1/9 |
Tuesday 1/10 |
Wednesday 1/11 |
Thursday 1/12 |
Friday 1/13 |
AM Session: 9-12 |
NCGR Introduction: Callum Workshop, NMINBRE Introduction: Joann Student Introductions Systems Orientation: Ethan Linux Introduction: Ethan |
Linux Introduction continued, Screen Intro: Joann DE environment (Bioconda Introduction) 1. Sequencing QC (FastQC): Joann |
3. Read aligner (HISAT2) |
Recap and Review: Joann DESEQ2 ctd: Joann |
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Lunch 12-1 |
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PM Session: 1-4 |
Linux Continued: Ethan |
1-2:15: Sequencing Technologies and Lab Protocols: Adam RNA-seq and Differential Gene Expression Module: Joann and Adam 2:15-4: 2. Genome and annotation download: Adam |
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Exercises |
Linux Exercise: Ethan |
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